IL_6HMO_010

3D structure

PDB id

6HMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

C(PSU)(PSU)A*UAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMO_010 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2635

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6HMO|5|A|C|4
6HMO|5|A|PSU|5
6HMO|5|A|PSU|6
6HMO|5|A|A|7
*
6HMO|5|B|U|16
6HMO|5|B|A|17
6HMO|5|B|A|18
6HMO|5|B|G|19

Current chains

Chain A

RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3')

Chain B

RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')

Nearby chains