IL_6HRM_039

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6HRM|1|1|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_039 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1623

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6HRM|1|1|G|933
6HRM|1|1|C|934
6HRM|1|1|A|935
*
6HRM|1|1|U|1380
6HRM|1|1|U|1381
6HRM|1|1|C|1382
6HRM|1|1|C|1383
6HRM|1|1|C|1384

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9