IL_6HRM_055

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6HRM|1|1|C|1400, 6HRM|1|1|A|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_055 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0909

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6HRM|1|1|C|1399
6HRM|1|1|C|1400
6HRM|1|1|G|1401
*
6HRM|1|1|C|4417
6HRM|1|1|A|4418
6HRM|1|1|A|4419
6HRM|1|1|G|4420

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains