IL_6HRM_082
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6HRM|1|1|G|2307, 6HRM|1|1|G|2311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_082 not in the Motif Atlas
- Geometric match to IL_5J7L_260
- Geometric discrepancy: 0.0713
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HRM|1|1|G|2180
6HRM|1|1|A|2181
6HRM|1|1|A|2182
6HRM|1|1|A|2183
6HRM|1|1|C|2184
*
6HRM|1|1|G|2305
6HRM|1|1|A|2306
6HRM|1|1|G|2307
6HRM|1|1|A|2308
6HRM|1|1|U|2309
6HRM|1|1|A|2310
6HRM|1|1|G|2311
6HRM|1|1|C|2312
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
Coloring options: