IL_6HRM_087
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6HRM|1|1|G|2282, 6HRM|1|1|A|2294, 6HRM|1|1|A|2295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_087 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.1105
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6HRM|1|1|G|2281
6HRM|1|1|G|2282
6HRM|1|1|G|2283
*
6HRM|1|1|C|2293
6HRM|1|1|A|2294
6HRM|1|1|A|2295
6HRM|1|1|U|2296
6HRM|1|1|C|2297
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain S
- 50S ribosomal protein L22
- Chain d
- 50S ribosomal protein L34
Coloring options: