IL_6HRM_099
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UCCCAAAG*CA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_099 not in the Motif Atlas
- Geometric match to IL_5J7L_278
- Geometric discrepancy: 0.0966
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6HRM|1|1|U|2510
6HRM|1|1|C|2511
6HRM|1|1|C|2512
6HRM|1|1|C|2513
6HRM|1|1|A|2514
6HRM|1|1|A|2515
6HRM|1|1|A|2516
6HRM|1|1|G|2517
*
6HRM|1|1|C|2656
6HRM|1|1|A|2657
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain J
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L20
Coloring options: