IL_6HRM_117

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6HRM|1|1|U|3060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_117 not in the Motif Atlas

Geometric match to IL_5J7L_297

Geometric discrepancy: 0.0586

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6HRM|1|1|C|2943
6HRM|1|1|U|2944
6HRM|1|1|A|2945
6HRM|1|1|U|2946
*
6HRM|1|1|A|3057
6HRM|1|1|A|3058
6HRM|1|1|A|3059
6HRM|1|1|U|3060
6HRM|1|1|G|3061

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains