IL_6HRM_119

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

6HRM|1|1|U|3029

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_119 not in the Motif Atlas

Geometric match to IL_5J7L_299

Geometric discrepancy: 0.0929

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6HRM|1|1|U|2974
6HRM|1|1|A|2975
6HRM|1|1|A|2976
6HRM|1|1|G|2977
*
6HRM|1|1|U|3026
6HRM|1|1|G|3027
6HRM|1|1|A|3028
6HRM|1|1|U|3029
6HRM|1|1|G|3030

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains