IL_6HRM_120

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_120 not in the Motif Atlas

Geometric match to IL_5J7L_300

Geometric discrepancy: 0.0818

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6HRM|1|1|U|2980
6HRM|1|1|G|2981
6HRM|1|1|U|2982
6HRM|1|1|A|2983
6HRM|1|1|G|2984
*
6HRM|1|1|U|3019
6HRM|1|1|G|3020
6HRM|1|1|A|3021
6HRM|1|1|G|3022
6HRM|1|1|G|3023

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains