IL_6HRM_182

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

6HRM|1|1|A|4408, 6HRM|1|1|A|4409

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_182 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2478

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6HRM|1|1|5MC|1407
6HRM|1|1|A|1408
6HRM|1|1|C|1409
*
6HRM|1|1|G|4407
6HRM|1|1|A|4408
6HRM|1|1|A|4409
6HRM|1|1|G|4410

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain q

30S ribosomal protein S12