IL_6HRM_189

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_189 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.0679

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6HRM|1|1|U|3357
6HRM|1|1|U|3358
6HRM|1|1|A|3359
6HRM|1|1|A|3360
6HRM|1|1|U|3361
6HRM|1|1|U|3362
6HRM|1|1|G|3363
6HRM|1|1|A|3364
6HRM|1|1|U|3365
6HRM|1|1|G|3366
*
6HRM|1|1|U|3388
6HRM|1|1|U|3389
6HRM|1|1|G|3390
6HRM|1|1|A|3391
6HRM|1|1|U|3392
6HRM|1|1|C|3393
6HRM|1|1|G|3394
6HRM|1|1|A|3395
6HRM|1|1|A|3396
6HRM|1|1|G|3397

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains