IL_6HTQ_007

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAGUAGC*GCGAAACG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_007 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.283

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.1

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6HTQ|1|A|C|241
6HTQ|1|A|U|242
6HTQ|1|A|G|243
6HTQ|1|A|A|244
6HTQ|1|A|G|245
6HTQ|1|A|U|246
6HTQ|1|A|A|247
6HTQ|1|A|G|248
6HTQ|1|A|C|249
*
6HTQ|1|A|G|255
6HTQ|1|A|C|256
6HTQ|1|A|G|257
6HTQ|1|A|A|258
6HTQ|1|A|A|259
6HTQ|1|A|A|260
6HTQ|1|A|C|261
6HTQ|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L35

Chain L

50S ribosomal protein L15