IL_6HTQ_018

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6HTQ|1|A|G|848, 6HTQ|1|A|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_018 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.162

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6HTQ|1|A|G|721
6HTQ|1|A|A|722
6HTQ|1|A|A|723
6HTQ|1|A|A|724
6HTQ|1|A|C|725
*
6HTQ|1|A|G|846
6HTQ|1|A|A|847
6HTQ|1|A|G|848
6HTQ|1|A|A|849
6HTQ|1|A|U|850
6HTQ|1|A|A|851
6HTQ|1|A|G|852
6HTQ|1|A|C|853

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15