IL_6HTQ_029

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGGC*GUUAC

Length

9 nucleotides

Bulged bases

6HTQ|1|A|A|943

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_029 not in the Motif Atlas

Geometric match to IL_2O3Y_003

Geometric discrepancy: 0.3982

The information below is about IL_2O3Y_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

6HTQ|1|A|G|927
6HTQ|1|A|G|928
6HTQ|1|A|G|929
6HTQ|1|A|C|930
*
6HTQ|1|A|G|940
6HTQ|1|A|U|941
6HTQ|1|A|U|942
6HTQ|1|A|A|943
6HTQ|1|A|C|944

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain x

GTP pyrophosphokinase