IL_6HTQ_038

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6HTQ|1|A|A|1134

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_038 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.3707

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6HTQ|1|A|G|1133
6HTQ|1|A|A|1134
6HTQ|1|A|G|1135
6HTQ|1|A|U|1136
6HTQ|1|A|G|1137
*
6HTQ|1|A|C|1146
6HTQ|1|A|U|1147
6HTQ|1|A|C|1148

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36