IL_6HTQ_040

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AAGGG*CGCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_040 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3169

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HTQ|1|A|A|1243
6HTQ|1|A|A|1244
6HTQ|1|A|G|1245
6HTQ|1|A|G|1246
6HTQ|1|A|G|1247
*
6HTQ|1|A|C|1279
6HTQ|1|A|G|1280
6HTQ|1|A|C|1281
6HTQ|1|A|U|1282
6HTQ|1|A|U|1283

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20