IL_6HTQ_067

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_067 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1955

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6HTQ|1|A|A|1885
6HTQ|1|A|G|1886
6HTQ|1|A|G|1887
6HTQ|1|A|A|1888
6HTQ|1|A|G|1889
*
6HTQ|1|A|C|1911
6HTQ|1|A|G|1912
6HTQ|1|A|A|1913
6HTQ|1|A|A|1914
6HTQ|1|A|U|1915

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L28

Chain w

Transfer RNA; tRNA