IL_6HTQ_083

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_083 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1697

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6HTQ|1|A|C|2495
6HTQ|1|A|C|2496
6HTQ|1|A|A|2497
6HTQ|1|A|A|2498
6HTQ|1|A|G|2499
*
6HTQ|1|A|C|2509
6HTQ|1|A|G|2510
6HTQ|1|A|A|2511
6HTQ|1|A|C|2512
6HTQ|1|A|G|2513

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain M

50S ribosomal protein L16

Chain x

GTP pyrophosphokinase