IL_6HTQ_113

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6HTQ|1|a|U|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_113 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1686

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6HTQ|1|a|G|146
6HTQ|1|a|G|147
6HTQ|1|a|A|148
6HTQ|1|a|U|149
6HTQ|1|a|A|150
6HTQ|1|a|A|151
6HTQ|1|a|C|152
*
6HTQ|1|a|G|167
6HTQ|1|a|C|168
6HTQ|1|a|U|169
6HTQ|1|a|A|170
6HTQ|1|a|A|171
6HTQ|1|a|U|172
6HTQ|1|a|A|173
6HTQ|1|a|C|174

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20