IL_6HTQ_156

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_156 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1942

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6HTQ|1|a|C|1312
6HTQ|1|a|G|1313
6HTQ|1|a|G|1314
6HTQ|1|a|A|1315
6HTQ|1|a|U|1316
6HTQ|1|a|C|1317
*
6HTQ|1|a|G|1338
6HTQ|1|a|U|1339
6HTQ|1|a|G|1340
6HTQ|1|a|A|1341
6HTQ|1|a|A|1342
6HTQ|1|a|G|1343

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain v

Transfer RNA; tRNA