IL_6HTQ_188

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCGGU*ACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_188 not in the Motif Atlas

Geometric match to IL_8C3A_432

Geometric discrepancy: 0.3569

The information below is about IL_8C3A_432

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.2

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6HTQ|1|A|C|1866
6HTQ|1|A|C|1867
6HTQ|1|A|G|1868
6HTQ|1|A|G|1869
6HTQ|1|A|U|1870
*
6HTQ|1|A|A|1930
6HTQ|1|A|C|1931
6HTQ|1|A|G|1932

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA