IL_6HTQ_196

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAGUU*AUCGCUG

Length

12 nucleotides

Bulged bases

6HTQ|1|A|U|2741, 6HTQ|1|A|C|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_196 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.36

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6HTQ|1|A|C|2721
6HTQ|1|A|A|2722
6HTQ|1|A|G|2723
6HTQ|1|A|U|2724
6HTQ|1|A|U|2725
*
6HTQ|1|A|A|2740
6HTQ|1|A|U|2741
6HTQ|1|A|C|2742
6HTQ|1|A|G|2743
6HTQ|1|A|C|2744
6HTQ|1|A|U|2745
6HTQ|1|A|G|2746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19