IL_6HTQ_213

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

6HTQ|1|a|U|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_213 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.241

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6HTQ|1|a|G|1134
6HTQ|1|a|U|1135
6HTQ|1|a|U|1136
6HTQ|1|a|G|1137
*
6HTQ|1|a|C|1154
6HTQ|1|a|A|1155
6HTQ|1|a|C|1156
6HTQ|1|a|U|1157
6HTQ|1|a|C|1158

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10