IL_6HTQ_232

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_232 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1739

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

6HTQ|1|A|U|2872
6HTQ|1|A|G|2873
6HTQ|1|A|G|2874
6HTQ|1|A|A|2875
6HTQ|1|A|A|2876
6HTQ|1|A|G|2877
*
6HTQ|1|A|U|2890
6HTQ|1|A|G|2891
6HTQ|1|A|G|2892
6HTQ|1|A|A|2893
6HTQ|1|A|G|2894

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19