IL_6I7O_050

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

6I7O|1|2|C|1096, 6I7O|1|2|U|1098, 6I7O|1|2|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_050 not in the Motif Atlas

Homologous match to IL_4V88_437

Geometric discrepancy: 0.1625

The information below is about IL_4V88_437

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62898.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|2|C|1034
6I7O|1|2|G|1035
6I7O|1|2|A|1036
*
6I7O|1|2|U|1095
6I7O|1|2|C|1096
6I7O|1|2|U|1097
6I7O|1|2|U|1098
6I7O|1|2|U|1099
6I7O|1|2|G|1100
6I7O|1|2|G|1101

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S2

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A

Chain c

40S ribosomal protein S23-A

Chain f

40S ribosomal protein S27-A