IL_6I7O_060

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

6I7O|1|2|G|1228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_060 not in the Motif Atlas

Homologous match to IL_4V88_447

Geometric discrepancy: 0.4812

The information below is about IL_4V88_447

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_34780.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6I7O|1|2|A|1224
6I7O|1|2|U|1225
6I7O|1|2|A|1226
6I7O|1|2|A|1227
6I7O|1|2|G|1228
6I7O|1|2|G|1229
6I7O|1|2|A|1230
6I7O|1|2|U|1231
6I7O|1|2|U|1232
6I7O|1|2|G|1233
*
6I7O|1|2|C|1252
6I7O|1|2|U|1253
6I7O|1|2|U|1254
6I7O|1|2|G|1255
6I7O|1|2|A|1256
6I7O|1|2|U|1257
6I7O|1|2|U|1258
6I7O|1|2|U|1259

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain D

40S ribosomal protein S12

Chain N

Ubiquitin-40S ribosomal protein S31