IL_6I7O_090

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

6I7O|1|2b|A|468

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_090 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.1375

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6I7O|1|2b|U|37
6I7O|1|2b|C|38
6I7O|1|2b|A|39
6I7O|1|2b|A|40
6I7O|1|2b|A|41
*
6I7O|1|2b|U|466
6I7O|1|2b|G|467
6I7O|1|2b|A|468
6I7O|1|2b|C|469
6I7O|1|2b|A|470
6I7O|1|2b|A|471

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Wb

40S ribosomal protein S9-A

Chain db

40S ribosomal protein S24-A