IL_6I7O_098

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6I7O|1|2b|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_098 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1527

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6I7O|1|2b|G|143
6I7O|1|2b|U|144
6I7O|1|2b|A|145
6I7O|1|2b|U|146
6I7O|1|2b|A|147
6I7O|1|2b|A|148
6I7O|1|2b|C|149
*
6I7O|1|2b|G|165
6I7O|1|2b|C|166
6I7O|1|2b|U|167
6I7O|1|2b|A|168
6I7O|1|2b|A|169
6I7O|1|2b|U|170
6I7O|1|2b|A|171
6I7O|1|2b|C|172

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Tb

40S ribosomal protein S6-A

Chain XE

60S ribosomal protein L24-A

Chain db

40S ribosomal protein S24-A