IL_6I7O_122

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_122 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.0944

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6I7O|1|2b|G|624
6I7O|1|2b|C|625
6I7O|1|2b|U|626
*
6I7O|1|2b|A|973
6I7O|1|2b|A|974
6I7O|1|2b|C|975

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain YQ

Large subunit ribosomal RNA; LSU rRNA

Chain Yb

40S ribosomal protein S13