IL_6I7O_126

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_126 not in the Motif Atlas

Geometric match to IL_4V88_423

Geometric discrepancy: 0.16

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

6I7O|1|2b|A|746
6I7O|1|2b|C|747
*
6I7O|1|2b|G|802
6I7O|1|2b|A|803
6I7O|1|2b|A|804
6I7O|1|2b|U|805

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Ub

40S ribosomal protein S7-A

Chain Xb

40S ribosomal protein S11-A

Chain bb

40S ribosomal protein S22-A

Chain cb

40S ribosomal protein S23-A