IL_6I7O_130

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_130 not in the Motif Atlas

Geometric match to IL_7RQB_050

Geometric discrepancy: 0.1713

The information below is about IL_7RQB_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6I7O|1|2b|A|865
6I7O|1|2b|G|866
*
6I7O|1|2b|C|962
6I7O|1|2b|A|963
6I7O|1|2b|U|964
6I7O|1|2b|U|965

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Yb

40S ribosomal protein S13

Chain bb

40S ribosomal protein S22-A

Chain fb

40S ribosomal protein S27-A