IL_6I7O_137
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_137 not in the Motif Atlas
- Geometric match to IL_4LFB_033
- Geometric discrepancy: 0.1787
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
6I7O|1|2b|C|990
6I7O|1|2b|G|991
6I7O|1|2b|A|992
6I7O|1|2b|A|993
6I7O|1|2b|G|994
*
6I7O|1|2b|C|1010
6I7O|1|2b|G|1011
6I7O|1|2b|U|1012
6I7O|1|2b|A|1013
6I7O|1|2b|G|1014
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain XW
- 60S ribosomal protein L2-A
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Zb
- 40S ribosomal protein S14-B
- Chain eb
- 40S ribosomal protein S26-B
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