IL_6I7O_141

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_141 not in the Motif Atlas

Geometric match to IL_5J7L_038

Geometric discrepancy: 0.1087

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6I7O|1|2b|G|1111
6I7O|1|2b|G|1112
6I7O|1|2b|A|1113
6I7O|1|2b|G|1114
6I7O|1|2b|U|1115
6I7O|1|2b|A|1116
6I7O|1|2b|U|1117
6I7O|1|2b|G|1118
*
6I7O|1|2b|U|1129
6I7O|1|2b|G|1130
6I7O|1|2b|A|1131
6I7O|1|2b|A|1132
6I7O|1|2b|A|1133
6I7O|1|2b|C|1134

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain XS

60S ribosomal protein L41-B

Chain cb

40S ribosomal protein S23-A