IL_6I7O_144
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6I7O|1|2b|C|1158, 6I7O|1|2b|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_144 not in the Motif Atlas
- Geometric match to IL_1KOG_007
- Geometric discrepancy: 0.1563
- The information below is about IL_1KOG_007
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
6I7O|1|2b|A|1157
6I7O|1|2b|C|1158
6I7O|1|2b|C|1159
6I7O|1|2b|A|1160
*
6I7O|1|2b|U|1617
6I7O|1|2b|C|1618
6I7O|1|2b|C|1619
6I7O|1|2b|C|1620
6I7O|1|2b|U|1621
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Bb
- 40S ribosomal protein S5
- Chain Fb
- 40S ribosomal protein S16-A
- Chain Jb
- 40S ribosomal protein S20
- Chain Lb
- 40S ribosomal protein S28-A
- Chain l
- mRNA
- Chain mb
- Transfer RNA; tRNA
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