IL_6I7O_153
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 6I7O|1|2b|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_153 not in the Motif Atlas
- Geometric match to IL_4V88_452
- Geometric discrepancy: 0.186
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6I7O|1|2b|C|1280
6I7O|1|2b|G|1281
*
6I7O|1|2b|C|1426
6I7O|1|2b|A|1427
6I7O|1|2b|G|1428
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Ab
- 40S ribosomal protein S3
- Chain Fb
- 40S ribosomal protein S16-A
- Chain Jb
- 40S ribosomal protein S20
- Chain Mb
- 40S ribosomal protein S29-A
- Chain Rb
- 40S ribosomal protein S2
- Chain l
- mRNA
- Chain nb
- Transfer RNA; tRNA
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