IL_6I7O_160
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_160 not in the Motif Atlas
- Geometric match to IL_4V88_459
- Geometric discrepancy: 0.1316
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|2b|G|1480
6I7O|1|2b|C|1481
6I7O|1|2b|C|1482
6I7O|1|2b|A|1483
6I7O|1|2b|G|1484
6I7O|1|2b|C|1485
6I7O|1|2b|G|1486
6I7O|1|2b|A|1487
*
6I7O|1|2b|U|1519
6I7O|1|2b|U|1520
6I7O|1|2b|G|1521
6I7O|1|2b|U|1522
6I7O|1|2b|G|1523
6I7O|1|2b|A|1524
6I7O|1|2b|A|1525
6I7O|1|2b|A|1526
6I7O|1|2b|C|1527
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Ab
- 40S ribosomal protein S3
- Chain Bb
- 40S ribosomal protein S5
- Chain Fb
- 40S ribosomal protein S16-A
- Chain Ib
- 40S ribosomal protein S19-A
- Chain Jb
- 40S ribosomal protein S20
- Chain Mb
- 40S ribosomal protein S29-A
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