IL_6I7O_162

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_162 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.1442

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6I7O|1|2b|C|1495
6I7O|1|2b|U|1496
6I7O|1|2b|U|1497
6I7O|1|2b|G|1498
*
6I7O|1|2b|C|1509
6I7O|1|2b|U|1510
6I7O|1|2b|U|1511
6I7O|1|2b|G|1512

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Ib

40S ribosomal protein S19-A

Chain Mb

40S ribosomal protein S29-A