IL_6I7O_164

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6I7O|1|2b|C|1637, 6I7O|1|2b|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_164 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1541

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6I7O|1|2b|C|1636
6I7O|1|2b|C|1637
6I7O|1|2b|G|1638
*
6I7O|1|2b|C|1764
6I7O|1|2b|A|1765
6I7O|1|2b|A|1766
6I7O|1|2b|G|1767

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain eb

40S ribosomal protein S26-B

Chain l

mRNA

Chain mb

Transfer RNA; tRNA