IL_6I7O_169

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_169 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1604

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6I7O|1|2b|C|1653
6I7O|1|2b|G|1654
6I7O|1|2b|A|1655
6I7O|1|2b|U|1656
*
6I7O|1|2b|A|1744
6I7O|1|2b|G|1745
6I7O|1|2b|A|1746
6I7O|1|2b|G|1747

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain XS

60S ribosomal protein L41-B

Chain YQ

Large subunit ribosomal RNA; LSU rRNA

Chain cb

40S ribosomal protein S23-A