IL_6I7O_186
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUC*GAGUG
- Length
- 8 nucleotides
- Bulged bases
- 6I7O|1|BQ|U|240
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_186 not in the Motif Atlas
- Homologous match to IL_5TBW_011
- Geometric discrepancy: 0.2043
- The information below is about IL_5TBW_011
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.3
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
6I7O|1|BQ|U|177
6I7O|1|BQ|U|178
6I7O|1|BQ|C|179
*
6I7O|1|BQ|G|237
6I7O|1|BQ|A|238
6I7O|1|BQ|G|239
6I7O|1|BQ|U|240
6I7O|1|BQ|G|241
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain BP
- 60S ribosomal protein L35-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
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