IL_6I7O_206

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_206 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1135

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6I7O|1|BQ|U|834
6I7O|1|BQ|G|835
6I7O|1|BQ|A|836
6I7O|1|BQ|A|837
6I7O|1|BQ|G|838
*
6I7O|1|BQ|U|855
6I7O|1|BQ|G|856
6I7O|1|BQ|G|857
6I7O|1|BQ|A|858
6I7O|1|BQ|G|859

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A

Chain BF

60S ribosomal protein L19-A