IL_6I7O_216
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6I7O|1|BQ|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_216 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1091
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
6I7O|1|BQ|G|999
6I7O|1|BQ|C|1000
6I7O|1|BQ|G|1001
6I7O|1|BQ|A|1002
6I7O|1|BQ|A|1003
6I7O|1|BQ|U|1004
*
6I7O|1|BQ|A|1046
6I7O|1|BQ|A|1047
6I7O|1|BQ|A|1048
6I7O|1|BQ|C|1049
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain BD
- 60S ribosomal protein L10
- Chain BI
- 60S ribosomal protein L5
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
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