IL_6I7O_242

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6I7O|1|BQ|U|1629, 6I7O|1|BQ|U|1815

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_242 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.2179

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|BQ|U|1627
6I7O|1|BQ|C|1628
6I7O|1|BQ|U|1629
6I7O|1|BQ|U|1630
6I7O|1|BQ|C|1631
*
6I7O|1|BQ|G|1811
6I7O|1|BQ|G|1812
6I7O|1|BQ|A|1813
6I7O|1|BQ|A|1814
6I7O|1|BQ|U|1815
6I7O|1|BQ|A|1816

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AN

60S ribosomal protein L27-A