IL_6I7O_247

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_247 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.1006

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|BQ|U|1694
6I7O|1|BQ|U|1695
6I7O|1|BQ|A|1696
6I7O|1|BQ|A|1697
6I7O|1|BQ|C|1698
*
6I7O|1|BQ|G|1747
6I7O|1|BQ|G|1748
6I7O|1|BQ|A|1749
6I7O|1|BQ|A|1750
6I7O|1|BQ|G|1751
6I7O|1|BQ|A|1752

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain BN

60S ribosomal protein L34-A