IL_6I7O_254

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6I7O|1|BQ|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_254 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1332

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6I7O|1|BQ|C|1918
6I7O|1|BQ|G|1919
6I7O|1|BQ|U|1920
6I7O|1|BQ|A|1921
6I7O|1|BQ|A|1922
6I7O|1|BQ|C|1923
*
6I7O|1|BQ|G|1928
6I7O|1|BQ|G|1929
6I7O|1|BQ|A|1930
6I7O|1|BQ|U|1931
6I7O|1|BQ|A|1932
6I7O|1|BQ|A|1933
6I7O|1|BQ|G|1934

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

60S ribosomal protein L41-B

Chain AT

60S ribosomal protein L43-A