IL_6I7O_266

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_266 not in the Motif Atlas

Homologous match to IL_8C3A_096

Geometric discrepancy: 0.1102

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6I7O|1|BQ|G|2391
6I7O|1|BQ|C|2392
6I7O|1|BQ|G|2393
6I7O|1|BQ|G|2394
*
6I7O|1|BQ|U|2986
6I7O|1|BQ|A|2987
6I7O|1|BQ|C|2988

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AU

60S ribosomal protein L16-A

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3