IL_6I7O_283

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6I7O|1|BQ|G|2945, 6I7O|1|BQ|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_283 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1189

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6I7O|1|BQ|C|2879
6I7O|1|BQ|U|2880
6I7O|1|BQ|C|2881
*
6I7O|1|BQ|G|2943
6I7O|1|BQ|U|2944
6I7O|1|BQ|G|2945
6I7O|1|BQ|A|2946
6I7O|1|BQ|G|2947

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3