IL_6I7O_303

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_303 not in the Motif Atlas

Homologous match to IL_5TBW_128

Geometric discrepancy: 0.1791

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6I7O|1|BQ|C|3235
6I7O|1|BQ|U|3236
6I7O|1|BQ|U|3237
6I7O|1|BQ|G|3238
*
6I7O|1|BQ|C|3249
6I7O|1|BQ|U|3250
6I7O|1|BQ|U|3251
6I7O|1|BQ|G|3252

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AU

60S ribosomal protein L16-A