IL_6I7O_343
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GGGG*UGCAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_343 not in the Motif Atlas
- Homologous match to IL_5TBW_023
- Geometric discrepancy: 0.1588
- The information below is about IL_5TBW_023
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_07235.3
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6I7O|1|YQ|G|725
6I7O|1|YQ|G|726
6I7O|1|YQ|G|727
6I7O|1|YQ|G|728
*
6I7O|1|YQ|U|741
6I7O|1|YQ|G|742
6I7O|1|YQ|C|743
6I7O|1|YQ|A|744
6I7O|1|YQ|C|745
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XV
- 60S ribosomal protein L29
- Chain YB
- 60S ribosomal protein L18-A
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