IL_6I7O_383

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_383 not in the Motif Atlas

Geometric match to IL_7A0S_046

Geometric discrepancy: 0.1172

The information below is about IL_7A0S_046

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6I7O|1|YQ|G|1492
6I7O|1|YQ|G|1493
6I7O|1|YQ|U|1494
6I7O|1|YQ|U|1495
*
6I7O|1|YQ|A|1835
6I7O|1|YQ|C|1836

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XF

60S ribosomal protein L37-A

Chain XH

60S ribosomal protein L25

Chain XL

60S ribosomal protein L39

Chain YN

60S ribosomal protein L34-A